Transposable Element Expression Browser
UMAP
Visualize gene or TE expression across the UMAP embedding. The cell-type reference map on the right stays fixed.
Cell-type UMAP reference
Static reference UMAP generated from the dataset annotations.
This map and legend do not change when users select a gene or TE.
Gene Box plot
Both dropdowns include all available cell types.
TE Box plot
Both dropdowns include all available cell types.
Gene Violin plot
Both dropdowns include all available cell types.
TE Violin plot
Both dropdowns include all available cell types.
This webpage was made using
ShinyCell
by Daniel Abbasi, Joshua Choi, and Imtiyaz Hariyani
Ranz Lab, Charlie Dunlop School of Biological Sciences, University of California, Irvine
For feedback, please contact: daabbasi@hs.uci.edu or ihariyan@uci.edu